AbstractOver the last several years, there has been a remarkable increase in the availability of new genomic strategies for analysis of complex traits in both human populations and mouse models. The advances in genome mapping, scanning, and analysis have been particularly valuable in the field of infectious diseases, leading to the cloning of a human gene for susceptibility to leprosy (Mira et al., 2003, 2004). In the mouse, the advent of genome scanning and new genetic strains has led to the identification of resistance=susceptibility loci for a large number of viral, bacterial, and eukaryotic pathogens. In the mammalian host, genetic control of resistance to infection (encompassing both innate and acquired immune phases) is regarded as a complex phenotype. In order to identify genes influencing host response to infection, the infectious process can be strategically divided into four stages: exposure to the pathogen, establishment of infection, progression of infection to disease, and clinical manifestation of the disease. Within these stages, the most important points of possible genetic control are likely to act during the innate and acquired phases of immunity.