Best NGS Service Providers for Low-Input RNA Sequencing

7 May 2025
When it comes to low-input RNA sequencing, choosing the right Next-Generation Sequencing (NGS) service provider is crucial. With its demand rising, particularly in fields like single-cell analysis and resource-limited specimen studies, it's essential to pinpoint companies that excel in precision, technology, and customer support. Here, we explore some of the best NGS service providers that specialize in low-input RNA sequencing, evaluating them based on their technology platforms, data quality, and customer service.

First on the list is Illumina, a titan in the sequencing industry. Illumina offers a range of solutions tailored for low-input RNA sequencing. Leveraging their cutting-edge platforms such as the NovaSeq and NextSeq series, they provide robust sequencing capabilities even with minimal sample quantities. Illumina's comprehensive ecosystem, which includes not only sequencing but also bioinformatics support, ensures high-quality data output. Their technology is noted for its precision, and the company's commitment to innovation ensures that users have access to the latest advancements in sequencing technology.

Another key player is Thermo Fisher Scientific. Known for their Ion Torrent technology, Thermo Fisher offers specialized kits and protocols designed for low-input RNA sequencing. The Ion AmpliSeq Transcriptome solution is particularly notable, as it enables researchers to work with challenging low-input samples while maintaining high data integrity and reproducibility. Thermo Fisher’s platforms are user-friendly, and they provide extensive customer support and training, which is beneficial for laboratories that are newly adopting NGS technologies.

BGI Genomics is also a formidable contender in this arena. With a focus on affordability without sacrificing quality, BGI provides a range of sequencing services suitable for low-input RNA applications. Their BGISEQ-500 platform is renowned for its cost-effective sequencing, making high-throughput and comprehensive analysis accessible to many researchers. BGI’s global presence and network of facilities offer added convenience for international customers. Their commitment to data quality and customer satisfaction is evident in their robust support services.

PerkinElmer, through its collaboration with Oxford Nanopore Technologies, offers a unique angle with Nanopore sequencing. Nanopore technology is particularly advantageous for low-input RNA sequencing due to its ability to sequence long reads, providing a more comprehensive view of transcripts. This technology allows for real-time data analysis, which speeds up the research process. PerkinElmer offers extensive support and scalable solutions, catering to both small-scale and high-throughput sequencing needs.

Lastly, QIAGEN, with its QIAseq UPX RNA sequencing solutions, caters specifically to low-input scenarios. The company emphasizes sample preservation and data accuracy, ensuring that even the smallest and most delicate samples yield reliable results. Their strong emphasis on bioinformatics, combined with hands-on customer support and training, empowers researchers to maximize their data's potential. QIAGEN’s integrated approach, from sample preparation to data analysis, simplifies the workflow, making it an attractive option for many labs.

When selecting an NGS service provider for low-input RNA sequencing, researchers should consider factors such as technology platform, cost, data quality, and customer support. Each of the providers mentioned has its strengths, and the right choice will depend on specific project needs and priorities. By evaluating these factors, researchers can ensure that they choose a partner that will not only meet their expectations but also enhance their overall research outcomes.

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