The aim of this study was to establish an integrated pharmacokinetic/pharmacodynamic (PK/PD) modeling approach of acetylkitasamycin for designing dosage regimens and decreasing the emergence of drug‐resistant bacteria. After oral administration of acetylkitasamycin to healthy and infected pigs at the dose of 50 mg/kg body weights (bw), a rapid and sensitiveLC–MS/MSmethod was developed and validated for determining the concentration change of the major components of acetylkitasamycin and its possible metabolite kitasamycin in the intestinal samples taken from the T‐shape ileal cannula. ThePKparameters, including the integrated peak concentration (Cmax), the time when the maximum concentration reached (Tmax) and the area under the concentration–time curve (AUC), were calculated by WinNonlin software. The minimum inhibitory concentration (MIC) of 60C. perfringensstrains was determined followingCLSIguideline. The in vitro and ex vivo activities of acetylkitasamycin in intestinal tract against a pathogenic strain ofC. perfringenstype A (CPFK122995) were established by the killing curve. OurPKdata showed that the integratedCmax,Tmax, andAUCwere 14.57–15.81 μg/ml, 0.78–2.52 hR, and 123.84–152.32 μg hr/ml, respectively. ThePDdata show thatMIC50andMIC90of the 60C. perfringensisolates were 3.85 and 26.45 μg/ml, respectively. The ex vivo growth inhibition data were fitted to the inhibitory sigmoidEmaxequation to provide the values ofAUC/MICto produce bacteriostasis (4.84 hr), bactericidal activity (15.46 hr), and bacterial eradication (24.99 hr). A dosage regimen of 18.63 mg/kg bw every 12 hr could be sufficient in the prevention ofC. perfringensinfection. The therapeutic dosage regimen forC. perfringensinfection was at the dose of 51.36 mg/kg bw every 12 hr for 3 days. In summary, the dosage regimen for the treatment ofC. perfringensin pigs administered with acetylkitasamycin was designed usingPK/PDintegrate model. The designed dose regimen could to some extent decrease the risk for emergence of macrolide resistance.