Article
Author: Moorman, Nathaniel J. ; Nandakumar, Meganathan ; Heise, Mark T. ; Merten, Eric M. ; Sears, John D. ; Hossain, Mohammad Anwar ; Law, Isabella ; Burdick, Jane E. ; Willson, Timothy M. ; Brown, Peter J. ; Pearce, Kenneth H. ; Morales, Noah L. ; Perveen, Sumera ; Ghoshal, Anirban ; Asressu, Kesatebrhan Haile ; Popov, Konstantin I. ; Vala, Anand
Despite their widespread impact on human health, there are no approved drugs for combating alphavirus infections. The heterocyclic β-aminomethyl vinyl sulfone RA-0002034 (1a) is a potent irreversible covalent inhibitor of the alphavirus nsP2 cysteine protease with broad-spectrum antiviral activity. Analogs of 1a that varied each of the three regions of the molecule were synthesized to establish structure-activity relationships for the inhibition of Chikungunya (CHIKV) nsP2 protease and viral replication. The vinyl sulfone covalent warhead was highly sensitive to modifications. However, alterations to the core five-membered heterocycle and aryl substituent were well tolerated. The 5-(2,5-dimethoxyphenyl)pyrazole (1o) and 4-cyanopyrazole (8d) analogs exhibited kinact/Ki ratios >9000 M-1 s-1. 3-Arylisoxazole (10) was identified as an isosteric replacement for the five-membered heterocycle, which circumvented the intramolecular cyclization of pyrazole-based inhibitors like 1a. A ligand-based model of the enzyme active site was developed to aid the design of nsP2 protease inhibitors as potential therapeutics against alphaviruses.