Background::DHFR is an indispensable enzyme required for the survival of almost all prokaryotic
and eukaryotic cells, making it an attractive molecular target for drug design.
Objective::In this study, a combined in silico and in vitro approach was utilized to screen out potential
anticancer and antimicrobial agents by using DHFR PDB ID 2W9S (for antimicrobial) and 1U72 (for
anticancer).
Methods::Computational work was performed using Maestro Schrodinger Glide software. The DHFR
inhibitory activity of the selected compounds was assessed using the DHFR test kit (CS0340-Sigma-
Aldrich).
Results::Exhaustive analysis of in-silico results revealed that some natural phenolic acids have a good
docking score when compared to standards, i.e., trimethoprim and methotrexate, and have astonishing
interactions with crucial amino acid residues available in the binding pocket of DHFR, such as Phe 92,
Asp 27, Ser 49, Asn 18, and Tyr 98. In particular, digallic acid and chlorogenic acid have amazing interactions
with docking scores of -9.9 kcal/mol and -9.6 kcal/mol, respectively, for the targeted protein
2W9S. Docking scores of -10.3 kcal/mol and -10.2 kcal/mol, respectively, for targeted protein 1U72.
The best hits were then tested in vitro to evaluate the DHFR inhibitory activity of the compounds.
DHFR inhibition activity results are in correlation with molecular docking results.
Conclusion::In silico and in vitro results confirmed the good binding and inhibitory activity of some
phenolic acids to the modeled target proteins. Among all the studied natural phenolic acids, chlorogenic
acid, digallic acid, and rosmarinic acid appeared to be the most potential leads for future chemical
alteration. This study can provide significant speculative guidance for the design and development
of potent DHFR inhibitors in the future by using these compounds as leads.