Microtubule affinity-regulating kinase 4 (MARK4) is a serine-threonine kinase that phosphorylates microtubule-associated proteins (MAPs) and increases the microtubule dynamics.Due to its direct involvement in initiation, cell division, progression, and cancer metastasis, MARK4 is considered a potential therapeutic target.Here, we designed, synthesized, and characterized vanillin-isatin hybrids and evaluated their MARK4 inhibitory potential.All of the compounds strongly bind to MARK4 and interact closely with the active site residues.Finally, the compound VI-9 was selected for further investigation due to its high binding affinity and strong MARK4 inhibitory potential.Tau-phosphorylation assay has further confirmed that VI-9 significantly reduced the activity of MARK4.Compared with vanillin, VI-9 showed a better binding affinity and MARK4 inhibitory potential.Cell viability assays on human hepatocellular carcinoma (HCC) cell lines C3A and SNU-475 revealed that VI-9 inhibited their growth and proliferation.In addition, these compounds were nontoxic (up to 200 μM) for noncancerous (HEK-293) cells.Interestingly, VI-9 induces apoptosis and decreases the metastatic potential of the C3A and SNU-475 cell lines.The present work opens a newer avenue for vanillin-isatin hybrids and their derivatives in developing MARK4-targeted anticancer therapies.