How many FDA approved asPNA are there?

17 March 2025
Introduction to Antisense Peptide Nucleic Acids (asPNA)

Definition and Mechanism of Action
Antisense peptide nucleic acids (asPNA) are synthetic analogs of nucleic acids that employ a peptide‐like backbone rather than the traditional sugar–phosphate backbone found in DNA or RNA. This modification grants them several distinctive properties, most notably enhanced binding affinity to complementary DNA and RNA sequences, improved specificity, and significant resistance to enzymatic degradation by nucleases or proteases. In their antisense role, asPNA molecules are designed to hybridize using Watson–Crick base pairing to target specific mRNA sequences and block translation or alter RNA splicing, thereby modulating gene expression. The neutrality of the backbone reduces electrostatic repulsion, which can facilitate the formation of more stable duplexes with the target nucleic acid molecules. Such stability is a promising characteristic, as it can potentially translate into improved pharmacokinetics and fewer off‐target effects.

Historical Development and Applications
Since the first demonstration of antisense approaches in 1978 by Stephenson and Zamecnik—which initially focused on modified DNA oligonucleotides—the field of antisense therapeutics has expanded rapidly. Over the years, the transition from DNA‐based to RNA‐ and peptide nucleic acid‐based methodologies opened up new avenues for targeting gene expression. Peptide nucleic acids were invented in the early 1990s and soon attracted attention owing to their chemical robustness and unique hybridization properties. Historically, a wide array of applications has been explored for asPNA, ranging from gene modulation to diagnostic assays. Although preclinical studies and various patents have documented the potential of using asPNA to inhibit oncogenes (for example, selective inhibition of the N‑myc gene as described in references), clinical translation has been largely confined to research and exploratory preclinical approaches rather than large‐scale therapeutic use. This extensive preclinical exploration highlights the scientific interest and potential utility of asPNA, even though that promise has yet to be fully realized in approved clinical therapeutics.

FDA Approval Process for asPNA

Regulatory Pathway and Requirements
The regulatory framework for obtaining U.S. Food and Drug Administration (FDA) approval of therapeutic agents is complex and stringent. As with any nucleic acid–based therapeutic, an asPNA candidate must traverse a well‐defined pathway that includes preclinical studies, investigational new drug (IND) submission, phase I–III clinical trials, and ultimately a New Drug Application (NDA) or Biologics License Application (BLA) submission for review. For nucleic acid therapeutics, key considerations include demonstrating pharmacokinetic stability, delivery efficiency, target specificity, and – critically – safety in terms of immunogenicity and off‐target effects. While conventional antisense oligonucleotides (ASOs) such as phosphorothioate-modified DNA aptamers have successfully navigated this process (e.g., fomivirsen, mipomersen, eteplirsen, nusinersen, and inotersen), asPNA-based drugs must overcome additional challenges. These challenges include demonstrating the appropriate biodistribution in vivo, ensuring that the improved nuclease-resistance and binding properties translate into clinically relevant outcomes, and, not least, achieving efficient cellular uptake given their relatively large and hydrophilic nature.

Key Milestones in Approval Process
Historically, the milestones for nucleic acid therapeutics have centered on early-phase clinical successes. For example, the approval of the first ASO, fomivirsen, for cytomegalovirus retinitis in AIDS patients marked a watershed moment in the field. Subsequent approvals of mipomersen and nusinersen validated that systemic or intrathecal delivery of chemically modified nucleic acids can be safe and efficacious in humans. These milestones served as a roadmap for other classes of nucleic acid therapeutics. However, despite the advances made by chemically modified oligonucleotides, the pathway for asPNA has not yet produced similar regulatory milestones. Although several patents have been filed and promising preclinical data have been obtained—demonstrating effective gene silencing and specific targeting in models of cancer and genetic diseases—none of these asPNA candidates has progressed through the full FDA approval process to market authorization. Thus, while the existing FDA paradigm for nucleic acid drugs offers a potential roadmap, the unique challenges associated with asPNA have to date precluded their achievement of an FDA-approved status.

Current FDA Approved asPNA

List and Description of Approved asPNA
After an extensive review of the references provided, there is no evidence to support the existence of any FDA-approved antisense peptide nucleic acid (asPNA) therapies. The extensive FDA approval packages and documents referenced predominantly pertain to chemically modified ASOs and RNA-based therapeutics. For instance, approved therapies such as fomivirsen, mipomersen, eteplirsen, nusinersen, and inotersen are all based on conventional antisense oligonucleotide designs and not on peptide nucleic acid modalities. No approved drug on record utilizes the peptide nucleic acid chemistry for its antisense mechanism. Therefore, according to the structured scientific literature and patents provided by Synapse-sourced documents and corroborated by FDA approval references, the number of FDA-approved asPNA is zero.

Indications and Clinical Applications
In other words, while a multitude of antisense drugs have received FDA approval for indications ranging from viral infections such as cytomegalovirus retinitis (fomivirsen) to genetic disorders such as spinal muscular atrophy (nusinersen) and familial hypercholesterolemia (mipomersen), none of these approved agents are based on the asPNA platform. Therapeutic candidates involving asPNA have been extensively reported in the academic and patent literature, particularly for targeting oncogenic pathways (for example, inhibition of N‑myc expression in tumors) and even as potential agents in infectious disease contexts. However, these remain in the preclinical or early development phase and have not yet completed the rigorous clinical testing necessary for FDA approval. The gap between preclinical promise and clinical application reflects the multifaceted challenges in demonstrating sufficient efficacy, safe delivery, and compatibility with the highly regulated FDA framework.

Challenges and Future Prospects

Regulatory and Scientific Challenges
There are several interrelated challenges that have contributed to the current absence of FDA-approved asPNA therapies.
1. Delivery and Cellular Uptake:
Despite the improved nuclease resistance of asPNA compounds, their relatively large size and hydrophilic nature can significantly impair cellular uptake. Physical barriers, such as the plasma membrane, remain a major obstacle for efficient internalization without the use of additional carriers or chemical modifications to enhance permeability.
2. Biodistribution and Pharmacokinetics:
Effective drug candidates require not only stable binding to target RNA but also favorable biodistribution profiles. Achieving an optimal pharmacokinetic profile means that the asPNA must reach the intended tissue, maintain its integrity, and remain active long enough to exert its therapeutic effect. This is a common challenge faced even by other classes of nucleic acid drugs.
3. Immunogenicity and Off-target Effects:
Although the neutral backbone of PNAs could theoretically reduce immunogenic responses, any new chemical entity must be thoroughly evaluated for unintended interactions within the human body. Lack of comprehensive clinical data remains a barrier, as the potential for off-target binding and unexpected toxicities must be minimized to meet FDA safety standards.
4. Manufacturing and Scalability:
Processes to synthesize high-quality, reproducible asPNA molecules at industrial scales are still evolving. Consistent manufacturing practices and strict quality control are imperative for FDA approval, and for asPNA candidates, robust manufacturing systems are still emerging.
5. Comparison with Established Technologies:
The success of chemically modified oligonucleotides, which have achieved several regulatory milestones, sets a high benchmark for any novel antisense platform. As a result, asPNA candidates must demonstrate clear, comparative advantages in efficacy, safety, or ease of delivery before they can compete in the regulatory arena.

Future Directions and Research Opportunities
Looking forward, there are several promising avenues for the development of asPNA therapeutics:
1. Advanced Delivery Technologies:
Ongoing research is focused on novel delivery systems, including nanoparticles, conjugation to cell-penetrating peptides, and even virus-like particles, which might significantly improve the clinical utility of asPNA molecules. Innovations in these areas could overcome the current limitations in cellular uptake and biodistribution.
2. Chemical Modifications:
Further chemical modifications of the PNA backbone or nucleobases might enhance binding affinity, specificity, and solubility. Incorporation of modifications that facilitate better endosomal escape and nuclear localization could further bridge the gap between preclinical potential and clinical effectiveness.
3. Combination Therapies:
Future research may explore the use of asPNA in conjunction with other therapeutic modalities. For example, the combination of asPNA with traditional chemotherapeutic agents, immune modulators, or RNA interference platforms may yield synergistic effects that enhance overall efficacy.
4. Broadening Indications:
As the understanding of gene regulation deepens, there is significant potential to adapt asPNA for a wide range of indications, including cancer, genetic diseases, and even infectious diseases. Strategic positioning within therapeutic pipelines could eventually lead to the first FDA-approved asPNA if these candidates are shown to address unmet clinical needs.
5. Clinical Trials and Regulatory Engagement:
Closer collaboration between academic researchers, industry, and regulatory agencies is crucial in designing early-phase clinical trials that rigorously evaluate the safety and efficacy of asPNA. These trials will pave the way for refined guidelines and, ultimately, successful FDA submissions.
6. Personalized Medicine:
Advances in genomics and targeted therapy are promising for personalized medicine. AsPNA’s high fidelity for complementary sequence recognition suggests that, with improved delivery systems, there may be strong future potential for tailoring asPNA therapies to individual patient genetic profiles, thereby enhancing efficacy and reducing side effects.

Conclusion

In summary, despite the considerable scientific promise documented for antisense peptide nucleic acids (asPNA) in preclinical studies and numerous patents, there are currently zero FDA-approved asPNA therapies. The established FDA approvals for nucleic acid therapeutics to date involve chemically modified antisense oligonucleotides—such as fomivirsen, mipomersen, eteplirsen, nusinersen, and inotersen—which employ traditional modifications (e.g., phosphorothioate backbones, 2′-O modifications) rather than the peptide nucleic acid platform.

From a general perspective, asPNA molecules offer enhanced stability and binding affinity, which are significant advantages over conventional DNA/RNA oligonucleotides. Specific scientific and regulatory challenges—in particular, efficient delivery, adequate biodistribution, manufacturing scalability, and stringent safety requirements—have prevented asPNA candidates from completing the full clinical development pipeline and achieving regulatory approval.

Looking at the issue specifically, the current regulatory and financial environment, combined with the inherent challenges of asPNA chemistry, has led to the situation that no asPNA drug has yet met the criteria for FDA approval. However, future innovations in chemical modification, delivery platforms, and clinical trial design may eventually enable a breakthrough for asPNA therapeutics. Researchers continue to explore various strategies to overcome these obstacles, and the evolving landscape of gene-targeted therapies suggests that the possibility of future FDA-approved asPNA drugs remains an exciting prospect.

In detailed conclusion, while traditional antisense therapeutics have seen significant clinical success, the newer asPNA modality is still in its developmental phase. Current evidence from highly regarded Synapse sources and FDA documentation indicates that there are no approved asPNA drugs as of now. The scientific community is actively pursuing research aimed at addressing the technical barriers that have so far impeded clinical translation. Therefore, the answer to the question "How many FDA approved asPNA are there?" is unequivocally zero.

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