Q1 · MEDICINE
Article
Author: Mangarin, Levi M. B. ; Zappasodi, Roberta ; Redmond, David ; Holmström, Morten O. ; Hobbs, Gabriela S. ; Gigoux, Mathieu ; Knudsen, Trine Alma ; Schad, Sara ; Wilkinson, Patrick ; Merghoub, Taha ; Skov, Vibe ; Mullally, Ann ; Venkatesh, Divya ; Ghosh, Arnab ; Jan, Max ; Wolchok, Jedd D. ; Hasselbalch, Hans ; George, Mariam M. ; Abdel-Wahab, Omar ; Kamaz, Baransel ; Molvi, Zaki ; Hoyos, David ; Larsen, Thomas Stauffer ; Kjær, Lasse ; Grauslund, Jacob H. ; Lindsley, R. Coleman ; Pourpe, Stephane ; Duke, William ; Met, Özcan ; Lisle, Thomas L. ; Bhardwaj, Nina ; Leventhal, Matthew J. ; Hansen, Dennis Lund ; Marneth, Anna E. ; Andersen, Mads H. ; Sepulveda, Manuel A. ; Greenbaum, Benjamin ; Rampal, Raajit ; Bozkus, Cansu Cimen ; Park, Joseph J. ; Ho, Vincent T. ; Verma, Svena ; Chan, Timothy
The majority of JAK2
V617F
-negative myeloproliferative neoplasms (MPNs) have disease-initiating frameshift mutations in calreticulin (
CALR
), resulting in a common carboxyl-terminal mutant fragment (CALR
MUT
), representing an attractive source of neoantigens for cancer vaccines. However, studies have shown that CALR
MUT
-specific T cells are rare in patients with CALR
MUT
MPN for unknown reasons. We examined class I major histocompatibility complex (MHC-I) allele frequencies in patients with CALR
MUT
MPN from two independent cohorts. We observed that MHC-I alleles that present CALR
MUT
neoepitopes with high affinity are underrepresented in patients with CALR
MUT
MPN. We speculated that this was due to an increased chance of immune-mediated tumor rejection by individuals expressing one of these MHC-I alleles such that the disease never clinically manifested. As a consequence of this MHC-I allele restriction, we reasoned that patients with CALR
MUT
MPN would not efficiently respond to a CALR
MUT
fragment cancer vaccine but would when immunized with a modified CALR
MUT
heteroclitic peptide vaccine approach. We found that heteroclitic CALR
MUT
peptides specifically designed for the MHC-I alleles of patients with CALR
MUT
MPN efficiently elicited a CALR
MUT
cross-reactive CD8
+
T cell response in human peripheral blood samples but not to the matched weakly immunogenic CALR
MUT
native peptides. We corroborated this effect in vivo in mice and observed that C57BL/6J mice can mount a CD8
+
T cell response to the CALR
MUT
fragment upon immunization with a CALR
MUT
heteroclitic, but not native, peptide. Together, our data emphasize the therapeutic potential of heteroclitic peptide–based cancer vaccines in patients with CALR
MUT
MPN.