Ultraviolet radiation (UVR) exposure increased in the past due to stratospheric ozone depletion, raising concerns about its long-lasting effects on freshwater ecosystems. While the ozone layer is gradually recovering, the effects of UVR on nutritional quality of periphyton as energy base for organisms in higher trophic levels in streams have not been understood. We conducted a manipulative experiment in mesocosm with four treatments (ambient, UVA, UVB, and combined UVA and UVB) to study the effects of UVR on nutritional quality of periphyton including oganic nutrient (long-chain polyunsaturated fatty acids, LC-PUFAs) and inorganic nutrient (P:C ratio) which both are nutritional quality biomarkers. UVR treatments significantly reduced periphyton nutritional quality represented by decreased LC-PUFAs i.e. eicosapentaenoic acid (EPA) under UVA, UVB, and UVAB treatments, while UVB and UVAB treatments resulted in the deficiency in phosphorus (P) in basal resources by a significant decrease in the P:C ratio. Specifically, LC-PUFAs decreased by approximately 40-50 % (from 5.20 % in the ambient to 2.61-3.20 %), and the P:C ratio decreased 2-3-fold (from 0.048 to 0.018-0.024) under UVR treatments. We found these the decrease of LC-PUFAs was linked to "shifts" of species in community, including a succession from Bacillariophyta to Chlorophytes and Cyanobacteria. It was revealed that UVR down regulated key enzymes in fatty acid biosynthesis and elongation, such as acetyl-CoA carboxylase (ACCase), 3-ketoacyl-CoA synthase (KCS), and omega-3 fatty acid desaturase (FAD3) associated with unsaturated fatty acid synthesis using transcriptomic analysis. These findings demonstrated that UVR exposure reduces the nutritional quality of periphyton as basal resources in stream food webs through community succession and down regulated genes encoding key enzymes.