Article
Author: Zhang, Shanshan ; Iliev, Iliyan ; Vignali, Dario ; Huh, Jun ; Patel, Niket ; Kuchroo, Vijay ; Jameson, Steve ; Goldrath, Ananda ; Liu, Aaron ; Magill, Ian ; Yang, Liang ; Imianowski, Charlotte ; Heim, Taylor ; Croteau, Josh ; Borys, Sam ; Chervonsky, Alexander ; Voisine, Jordan ; Choi, Josh ; Wang, Tianze ; Merkenschlager, Julia ; Carbonetto, Peter ; Gapin, Laurent ; von Andrian, Ulrich ; Stephens, Matthew ; Bangs, Derek ; Galleti, Giovanni ; Weiss, Eric ; Freuchet, Antoine ; Jenkins, Marc ; del Rio, Olga Barreiro ; Lucas, Erin ; Balderas, Robert ; Brbic, Maria ; Thefane, Claire ; Thomas, Paul ; Alegre, Marisa ; Spranger, Stefani ; Block, Katharine ; Lin, Woan-Yu ; Kang, Joonsoo ; Casey, Odhran ; Park, Jinseok ; Siwapornchai, Nalat ; Cassano, Alexandra ; Behar, Sam ; Abbondanza, Domenic ; Vacchio, Melanie ; Shinkawa, Tomoyo ; Muljo, Stefan ; Starnbach, Michael ; Malik, Ankit ; Bosselut, Remy ; Globig, Anna-Maria ; Mallah, Dania ; Reilly, Shanelle ; Zemmour, David ; Pepper, Marion ; Panigrahi, Siba Smarak ; Nussenzweig, Michel ; Chang, Evelyn ; Lai, Rocky ; Kossida, Sofia ; Bee, Gavyn ; Giuducelli, Véronique ; Abdollahi, Nika ; Benoist, Christophe ; Morris, Nathan ; London, Mariya ; Osum, Kevin ; Ferraj, Enxhi ; Welsh, Alia ; Piekarsa, Val ; Jabri, Bana ; Croze, Myriam ; Quon, Sara ; Sinclair, David ; Fiusco, Maurizio ; Kusakabe, Takato ; Cadwell, Ken ; Garcia-Rivera, Lizzie ; Kaplan, Dan ; Kronenberg, Mitch ; Candéias, Serge ; Schattgen, Stefan ; Kaech, Susan ; Lee, Amy ; Gong, Xutong ; Lebron-Figueroa, Andrea ; Brossay, Laurent
Abstract:T cells play a pivotal role in the immune system, relying on their somatically rearranged T cell receptor (TCR) to recognize peptide-MHC complexes. A comprehensive and extensively used set of monoclonal antibodies (mAbs) against TCR variable regions was generated in the previous century. The separate identification of mAb-specific TCR-V proteins and TRV genes has resulted in multiple nomenclatures, making their relationships unclear. To formally re-establish this link and determine patterns of reactivity within TRV subfamilies, we sorted T cells from C57BL/6 mice positive for any one of a panel of 22 anti-V mAbs and determined their TRV genes by single-cell TCRseq. RNAseq data revealed consistently higher expression of repeated elements from the ERV1-family LTR RLTR6Mm (mapping to Gm20400) in cells utilizing TRBV segments encoded within a 66 kb genomic region between TRBV23 and TRBV30. Our findings provide a comprehensive resource for anti-mouse TCR mAb specificity and insight into V-gene usage biases and T cell function.