This article illustrates about Cation channel activity of apolipoprotein l1 is modulated by haplotype background.Three of these haplotypes, designated K1K, EIK, and EMR, account for the majority of protein isoforms in the human .KIK is the most prevalent worldwide.EIK is the most common haplotype in people of African ancestry and is absent from other populations; Gl and G2 variants are only naturally found in the EIK background.EMR thought to be of Neanderthal origin) is most frequently encountered in European populations.To test whether haplotype alters ion permease activity, we generated expression constructs encoding the GO, Gl, and G2 variants in die KIK, EIK, and EMR haplotypes, and assayed resulting proteins for ion permease activity and membrane associationOutput from the chloride-selective electrode is shown, starting widi 10μΜ KCl in buffered sucrose (pH 7.5).Protein and KCl loaded liposomes with no extravesicular KCl are added at the first arrow.Chloride ionophore is added at the second arrow, inducing lumen-pos. potential driving KCl efflux, limited by the K permeability.Triton X-IOO is added at the third arrow, releasing remaining intravesicular KC1.The maximal rate of fractional Cl release alter addition of ionophore is taken as the potassium permeability.Permeability conferred by each protein is equal to the rate in presence of protein minus the rate in the absence of protein.Thus, we find that naturally occurring haplotype-encoded isoforms of ApoLl have a significant effect on the cation channel activity without an effect on the chloride permease activity.The cation channel activity is greatest in the EIK (African) haplotype and is least in the EMR (Neanderthal) haplotype.The relative differences in cation channel activity among the wildtype and disease-associated variants is independent of haplotype: in all three haplotypes, the disease-associated variants have approx. double the cation channel activity ofthe wild type.