Abstract:
Hypoxia has become one of the most critical factors limiting the development of aquaculture. Crucian carp (
Carassius auratus
) is widely consumed fish in China, with excellent tolerance to hypoxic environment. However, the molecular mechanisms underlying hypoxia adaptation and tolerance in crucian carp remain unclear. Compared with the control, increased T‐SOD, CAT, GSH‐Px, T‐AOC, ALT, and AST activities and MDA, TCHO, and TG contents, and decreased TP and ATP contents were observed after hypoxia stress. Based on RNA‐seq, 2479 differentially expressed (DE) mRNAs and 60 DE miRNAs were identified, and numerous DE mRNAs involved in HIF signaling pathway (
hif‐1α
,
epo
,
vegfa
, and
ho
), anaerobic metabolism (
hk1
/
hk2
,
pfk
,
gapdh
,
pk
, and
ldh
) and immune response (
nlrp12
,
cxcr1
,
cxcr4
,
ccr9
, and
cxcl12
) were significantly upregulated after hypoxia exposure. Integrated analysis found that
ho
,
igfbp1
,
hsp70
, and
hk2
were predicted to be regulated by novel_867, dre‐miR‐125c‐3p/novel_173, dre‐miR‐181b‐5p, and dre‐miR‐338‐5p/dre‐miR‐17a‐3p, respectively, and targets of DE miRNAs were significantly enriched in MAPK signaling pathway, FoxO signaling pathway, and glycolysis/gluconeogenesis. Expression analysis showed that the mRNA levels of
vegfa
,
epo
,
ho
,
hsp70
,
hsp90aa.1
,
igfbp1
,
ldh
,
hk1
,
pfk
,
pk
, and
gapdh
exhibited a remarkable increase, whereas
sdh
and
mdh
were downregulated in the H3h, H12h, and H24h groups compared with the control. Furthermore, research found that
hk2
is a target of dre‐miR‐17a‐3p, overexpression of dre‐miR‐17a‐3p significantly decreased the expression level of
hk2
, while the opposite results were obtained after dre‐miR‐17a‐3p silencing. These results contribute to our understanding of the molecular mechanisms of hypoxia tolerance in crucian carp.